Showing posts with label R. Show all posts
Showing posts with label R. Show all posts

Monday, November 17, 2025

Animated Graph maker using R-Project-Shiny-based Packages

This animated graph maker has been developed using R-Project (4.4.1), RStudio 2025.09.1 Build 401. It is made using packages, including shiny, ggplot2, gganimate, gifski, av, dplyr, readr, shinycssloaders, gapminder, rlang, and shinyjs..

Check my other online advanced statistical tools here:

1. Structural Equation Modeling using Lavaan package in R - https://jeepakistan.blogspot.com/2025/07/structural-equation-modeling-sem-using.html

2. Meta-analysis using Odds Ratio (OR) in Microsoft Excel - https://jeepakistan.blogspot.com/2025/06/meta-analysis-using-odds-ratio-or-in.html

3. Meta-analysis using Cohen's d in Microsoft Excel - https://jeepakistan.blogspot.com/2025/05/meta-analysis-using-cohens-d-in.html

4. Meta-analysis using Correlation (r) in Microsoft Excel - https://jeepakistan.blogspot.com/2025/05/meta-analysis-using-correlation-r-in.html

5. Meta-Analysis using R-Project-based Metafor, and Online calculator (R-Project-Shiny-based) - https://jeepakistan.blogspot.com/2025/09/meta-analysis-using-r-project-based.html

6. Time Series Analyses using R-Project-based Packages, and Online calculator (R-Project-Shiny-based) - https://jeepakistan.blogspot.com/2025/10/time-series-analyses-using-r-project.html

Wednesday, September 10, 2025

Meta-Analysis and Causal Meta-analysis using R-Project-based Metafor and CausalMetaR - A Web app (R-Project-Shiny-based)

This online calculator has been developed using R-Project (4.5.3), RStudio 2026.04.0 Build 526. It is made using packages, including shiny, shinydashboard, metafor, readr, DT, ggplot2, plotly, broom, rmarkdown, CausalMetaR, SuperLearner, and dplyr. Powered by Metafor R package: Viechtbauer, W. (2010). Conducting meta-analyses in R with the metafor package. Journal of Statistical Software, 36(3), 1-48. CausalMetaR package: Wang, G., McGrath, S., & Lian, Y. (2025). CausalMetaR: An R package for performing causally interpretable meta-analyses. Research Synthesis Methods, 16(2), 425-440. Terms of Use and Disclaimer: This tool is for educational purposes only. The author assumes no liability for inaccuracies or decisions made based on this output. No data is stored on our servers. The Meta-Analysis Toolkit provided on this site is an open-source tool intended for exploratory data analysis. Users are encouraged to verify all results with primary statistical software before publication. The owner of JeePakistan.blogspot.com is not responsible for any research outcomes derived from this tool.

Check my other online advanced statistical tools here:

1. Structural Equation Modeling using Lavaan package in R - https://jeepakistan.blogspot.com/2025/07/structural-equation-modeling-sem-using.html

2. Meta-analysis using Odds Ratio (OR) in Microsoft Excel - https://jeepakistan.blogspot.com/2025/06/meta-analysis-using-odds-ratio-or-in.html

3. Meta-analysis using Cohen's d in Microsoft Excel - https://jeepakistan.blogspot.com/2025/05/meta-analysis-using-cohens-d-in.html

4. Meta-analysis using Correlation (r) in Microsoft Excel - https://jeepakistan.blogspot.com/2025/05/meta-analysis-using-correlation-r-in.html

5. Time Series Analyses using R-Project-based Packages, and Online calculator (R-Project-Shiny-based);https://jeepakistan.blogspot.com/2025/10/time-series-analyses-using-r-project.html

===========================
  • NOTE: Updated on 25/04/2026
  • ===========================
  • NOTE: Updated on 23/06/2026
    1. Added an option to select Pre-calculated HR/OR/RR Data in the column mapping section.
    2. Added an option for Prediction Intervals under effect size options.
    3. Added an option for Hartung-Knapp Adjustment.
    4. Added an option to conduct Publication Bias Tests using:
      • Egger’s weighted regression test
      • Begg’s rank correlation test
    5. Added an option for Sensitivity Analysis (Leave-One-Out).
    ============================

    Saturday, November 16, 2024

    Day 6: 30-days to learn rgl, plotly, and gganimate - Create an interactive 3D plot with rgl that uses various viewpoints or angles to simulate rotation

    rglWebGL


    Step 1: Install and Load the rgl Package

    Ensure that you have the rgl package installed and loaded in your R environment.

    # Install rgl if not already installed
    if (!require("rgl")) install.packages("rgl")
     
    # Load the rgl package
    library(rgl)

    Step 2: Prepare a Dataset

    For demonstration purposes, create or use a sample 3D dataset (e.g., random points in 3D space).

    # Sample dataset with random 3D points
    set.seed(123)
    n <- 100
    x <- rnorm(n)
    y <- rnorm(n)
    z <- rnorm(n)
    colors <- rainbow(n)

    Step 3: Create a Basic 3D Plot

    Use plot3d() to create a basic 3D scatter plot.

    # Create a 3D scatter plot
    plot3d(x, y, z, col = colors, size = 5, type = 's', xlab = "X-axis", ylab = "Y-axis", zlab = "Z-axis")

    Step 4: Enhance the Plot with Customization

    Add customizations like grid lines, labels, and lighting for better visualization.

    # Add grid lines
    grid3d("x")
    grid3d("y")
    grid3d("z")
     
    # Enhance lighting
    light3d(specular = "white")

    Step 5: Set Up Rotation Parameters

    Define a sequence of angles to rotate the plot and simulate a continuous rotation.

    # Define rotation parameters
    angles <- seq(0, 360, by = 5) # 5-degree increments

    Step 6: Rotate the Plot Programmatically

    Use a loop to rotate the plot around a specific axis (e.g., the z-axis).

    # Rotate around the z-axis
    for (angle in angles) {
      view3d(theta = angle, phi = 30) # Rotate theta; phi is the vertical angle
      Sys.sleep(0.1)                 # Pause for 0.1 seconds for smooth transition
    }

    Step 7: Export the Visualization

    Save the interactive 3D plot as an HTML widget or image file for sharing or further use.

    # Save as an interactive HTML file
    rglwidget() %>% htmlwidgets::saveWidget("3D_plot_rotation.html")
     
    # Save as a static image (PNG)
    rgl.snapshot("3D_plot_rotation.png")

    Step 8: Test and Adjust

    • Experiment with different rotation axes (x, y, or z) by modifying view3d() parameters.
    • Adjust the speed of rotation using Sys.sleep().

    Outcome

    By the end of this exercise, you will have an interactive 3D plot that smoothly rotates, providing a dynamic visualization of the data. You can integrate this plot with tools like plotly or embed it into web presentations for a polished output.